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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15308117_15308905_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15308117 - 15308905
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGAATG
5'SS Class:
major
3'SS Sequence:
CTTTTTTGGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTGTAAACT
Flanking Amino Acid:
SAFISSVNIAGGFLVTQRML
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1
68.1
42.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
72.4
0.5
1
69.2
41.8
Minor 5ss
42.7
-0.8
2.8
49.5
46.5
Minor BPS
59.7
0.38
2.3
86.99
39.2

Associated Gene:

Gene:
NNT
Ensembl Gene ID:
ENSAPLG00000002368
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040116
15290545 - 15331400
40856
ENSAPLT00000002474
15290545 - 15329243
38699