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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15329678_15330028_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15329678 - 15330028
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTTTCCTGAATC
Flanking Amino Acid:
PVLEVWKSKQVIVMKRSLGV
Intron Amino Acid Position:
1038

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.9
23.9
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
82.4
0.73
0.9
77.9
34.5
Minor 5ss
36.1
-1.6
3.2
46.9
48.4
Minor BPS
81
0.95
1.2
87.53
28.7

Associated Gene:

Gene:
NNT
Ensembl Gene ID:
ENSAPLG00000002368
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040116
15290545 - 15331400
40856