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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15363292_15371730_R

Intron Information:

Intron Rank:
131382
Intron Class:
major
Intron Phase:
Intron Coordinates:
15363292 - 15371730
Intron Length:
8439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GCTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87
0.83
0.6
80.7
31.3
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
52.2
0.15
1.8
69.14
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017894
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039686
15362446 - 15372083
9638