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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15370253_15453548_F

Intron Information:

Intron Rank:
124712
Intron Class:
major
Intron Phase:
Intron Coordinates:
15370253 - 15453548
Intron Length:
83296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTACTGTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTATGTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
83.7
27.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
81.7
0.71
0.9
73.2
41.9
Minor 5ss
32.5
-2
3.5
48.7
47.5
Minor BPS
59.1
0.26
2.1
74.32
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047499
15369840 - 15453929
84090