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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15374476_15375420_F

Intron Information:

Intron Rank:
137493
Intron Class:
major
Intron Phase:
Intron Coordinates:
15374476 - 15375420
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGCATC
5'SS Class:
major
3'SS Sequence:
TTCTACTTATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TCATCTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.2
36.4
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
74.7
0.56
0.9
74.7
34.5
Minor 5ss
46.4
-0.4
2.9
65.7
38.6
Minor BPS
61.6
0.45
1.7
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024034
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031391
15374290 - 15376610
2321