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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15375536_15376506_F

Intron Information:

Intron Rank:
137494
Intron Class:
major
Intron Phase:
Intron Coordinates:
15375536 - 15376506
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CATCTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
CAGTGCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
79.9
0.67
0.8
73.3
31.2
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
51
0.11
2.1
68.64
47.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024034
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031391
15374290 - 15376610
2321