Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15418925_15419311_F

Intron Information:

Intron Rank:

125443

Intron Class:

major

Intron Phase:

Intron Coordinates:

15418925 - 15419311

Intron Length:

387

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAGGTGAT

5'SS Class:

major

3'SS Sequence:

CTCTCTTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTCAG

U12 Branch Point Sequence:

CTCTCTTTTACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

74.1

36.5

Major BPS

58.4

0.21

1.5

67.6

40.6

Major PPT

87.9

0.85

0.7

82.7

25.9

Minor 5ss

33.1

-1.9

3.5

45.5

Minor BPS

63.9

0.43

1.7

70.65

41.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017587

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041331

15418163 - 15419353

1191

ENSAPLT00000027137

15414837 - 15419353

4517