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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15418925_15419546_F

Intron Information:

Intron Rank:
125441
Intron Class:
major
Intron Phase:
Intron Coordinates:
15418925 - 15419546
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTGAT
5'SS Class:
major
3'SS Sequence:
ATTGTTGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTCACTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
36.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.4
0.5
0.9
66.7
40
Minor 5ss
33.1
-1.9
3.5
45
45.5
Minor BPS
59.9
0.39
1.9
85.4
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017587
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023075
15418765 - 15419584
820