Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15441984_15453548_F

Intron Information:

Intron Rank:

124711

Intron Class:

major

Intron Phase:

Intron Coordinates:

15441984 - 15453548

Intron Length:

11565

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGGGGA

5'SS Class:

major

3'SS Sequence:

TTTACTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTATGTTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.3

42.4

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

81.7

0.71

0.9

73.2

41.9

Minor 5ss

-3

3.2

29.9

Minor BPS

59.1

0.26

2.1

74.32

36.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017219

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045446

15439488 - 15453575

14088