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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1562683_1565933_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1562683 - 1565933
Intron Length:
3251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGTTT
5'SS Class:
major
3'SS Sequence:
ACGTTCTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ACGTTCTTGACA
Flanking Amino Acid:
YGTHHWTPPKGHVDPGEDDL
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
77.5
33.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
69.4
0.44
1
64.8
40.8
Minor 5ss
37.3
-1.4
3.5
55.5
48.6
Minor BPS
67.4
0.54
1.2
67.62
39.1

Associated Gene:

Gene:
NUDT2
Ensembl Gene ID:
ENSAPLG00000007473
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007748
1562348 - 1566746
4399