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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15680169_15683407_R

Intron Information:

Intron Rank:
142237
Intron Class:
major
Intron Phase:
Intron Coordinates:
15680169 - 15683407
Intron Length:
3239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTGA
5'SS Class:
major
3'SS Sequence:
AACTTTCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTATTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
66.6
41.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
69.9
0.45
1
65.2
40.4
Minor 5ss
34.7
-1.7
3.5
46.6
48.7
Minor BPS
64.9
0.54
1.7
83.91
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023863
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022564
15679072 - 15687543
8472