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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15683590_15687540_R

Intron Information:

Intron Rank:
142238
Intron Class:
major
Intron Phase:
Intron Coordinates:
15683590 - 15687540
Intron Length:
3951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TTTTTTGACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.8
40.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
80.3
0.68
0.9
76.6
36.7
Minor 5ss
43.1
-0.8
2.8
56.7
41.7
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023863
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022564
15679072 - 15687543
8472