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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1574002_1577526_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1574002 - 1577526
Intron Length:
3525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAATC
5'SS Class:
strong_major
3'SS Sequence:
AATTTTGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGATTTTAAAGT
Flanking Amino Acid:
YNYGLPHSCIRSSTSEKETP
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
80.9
31.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.6
0.58
0.9
70.3
40.3
Minor 5ss
38.1
-1.3
3
52.4
44.3
Minor BPS
49.4
0.03
1.9
68.47
42.8

Associated Gene:

Gene:
KIF24
Ensembl Gene ID:
ENSAPLG00000007341
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035373
1567402 - 1599571
32170
ENSAPLT00000007611
1572053 - 1599571
27519
ENSAPLT00000043483
1567402 - 1599571
32170