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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1582008_1583467_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1582008 - 1583467
Intron Length:
1460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTGAAA
5'SS Class:
major
3'SS Sequence:
GTTTCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
AGTTCAAAAATC
Flanking Amino Acid:
QLYDLLNGRKRLFAREDSKH
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.4
36.3
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
84.7
0.78
0.8
81.6
35
Minor 5ss
37.7
-1.4
3.1
48.2
47.6
Minor BPS
45.5
-0.3
2.1
59.94
38.9

Associated Gene:

Gene:
KIF24
Ensembl Gene ID:
ENSAPLG00000007341
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043483
1567402 - 1599571
32170
ENSAPLT00000035373
1567402 - 1599571
32170
ENSAPLT00000007611
1572053 - 1599571
27519