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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1583556_1585482_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1583556 - 1585482
Intron Length:
1927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCTCA
5'SS Class:
major
3'SS Sequence:
CCTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAT
U12 Branch Point Sequence:
TTCCCCTTATTT
Flanking Amino Acid:
QVDSVELLLEVILKGGKERS
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.6
39.2
Major BPS
70
0.5
1.1
71.2
35.2
Major PPT
85.3
0.8
0.8
79.9
31.7
Minor 5ss
49.7
-0
2.5
66
45
Minor BPS
67.1
0.62
1.6
81.24
40.8

Associated Gene:

Gene:
KIF24
Ensembl Gene ID:
ENSAPLG00000007341
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043483
1567402 - 1599571
32170
ENSAPLT00000035373
1567402 - 1599571
32170
ENSAPLT00000007611
1572053 - 1599571
27519