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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1591076_1591958_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1591076 - 1591958
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTCATTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCTCATTTTACA
Flanking Amino Acid:
HTLNTLRYADRVKELKKGIK
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
85.3
0.79
0.8
79.4
32.3
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
51.2
0.03
1.8
65.66
40.4

Associated Gene:

Gene:
KIF24
Ensembl Gene ID:
ENSAPLG00000007341
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043483
1567402 - 1599571
32170
ENSAPLT00000035373
1567402 - 1599571
32170
ENSAPLT00000007611
1572053 - 1599571
27519