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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1594383_1596072_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1594383 - 1596072
Intron Length:
1690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
TTATCTTAACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATCTTAACC
Flanking Amino Acid:
KWQKEALEKAQQAMIRAHRQ
Intron Amino Acid Position:
1332

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.8
0.51
1
67.5
42.6
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
82.3
0.99
1.1
86.91
29.7

Associated Gene:

Gene:
KIF24
Ensembl Gene ID:
ENSAPLG00000007341
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007611
1572053 - 1599571
27519
ENSAPLT00000043483
1567402 - 1599571
32170
ENSAPLT00000035373
1567402 - 1599571
32170