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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15962193_15964081_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15962193 - 15964081
Intron Length:
1889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATTATTA
5'SS Class:
major
3'SS Sequence:
CTTGTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTCAG
U12 Branch Point Sequence:
GGCTGGCTAAGT
Flanking Amino Acid:
TVAIDRLDRIGKKNSILLQK
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
72.3
33
Major BPS
47.3
-0.1
1.7
57.1
49.4
Major PPT
77.8
0.63
0.9
72.8
37.5
Minor 5ss
47.7
-0.2
2.8
65.1
46
Minor BPS
36.5
-0.9
2.6
53.66
47.2

Associated Gene:

Gene:
HCN1
Ensembl Gene ID:
ENSAPLG00000011715
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012208
15961294 - 16161203
199910