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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_15964247_15979445_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15964247 - 15979445
Intron Length:
15199

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TGTTTCCTATGT
Flanking Amino Acid:
LKLTDGSYFGEICLLTKGRR
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
84.4
0.77
0.7
77.3
31.4
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
47.9
-0
2.2
72.9
43.9

Associated Gene:

Gene:
HCN1
Ensembl Gene ID:
ENSAPLG00000011715
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012208
15961294 - 16161203
199910