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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16002510_16028310_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16002510 - 16028310

Intron Length:

25801

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTCCT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCCTGACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TTCTCCTGACAG

Flanking Amino Acid:

DSSRRQYQEKYKQVEQYMSF

Intron Amino Acid Position:

397

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

1.1

75.3

40.8

Major BPS

79.7

0.74

79.6

35.6

Major PPT

76.3

0.59

0.9

72.3

32.5

Minor 5ss

42.4

-0.8

2.9

60.3

Minor BPS

50.3

-0.1

1.9

61.48

45.9

Associated Gene:

Gene:

HCN1

Ensembl Gene ID:

ENSAPLG00000011715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012208

15961294 - 16161203

199910