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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16028530_16051589_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16028530 - 16051589

Intron Length:

23060

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTTAT

U12 Branch Point Sequence:

GCTCAGTTATCT

Flanking Amino Acid:

DCWVSLNGMVNDSWGKQYSY

Intron Amino Acid Position:

324

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

85.6

30.4

Major BPS

61.2

0.28

1.2

42.8

Major PPT

95.2

1.02

0.5

91.6

19.5

Minor 5ss

44.2

-0.6

2.9

66.4

38.5

Minor BPS

43.7

-0.4

2.3

63.15

46.4

Associated Gene:

Gene:

HCN1

Ensembl Gene ID:

ENSAPLG00000011715

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012208

15961294 - 16161203

199910