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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1602940_1604691_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1602940 - 1604691

Intron Length:

1752

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGTG

5'SS Class:

strong_major

3'SS Sequence:

CTGTCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTACAA

U12 Branch Point Sequence:

TTTCTCTTACAA

Flanking Amino Acid:

LEMHQCSEEKITELLQLMSQ

Intron Amino Acid Position:

476

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.9

38.2

Major BPS

61.2

0.28

1.1

70.6

34.3

Major PPT

83.4

0.75

0.8

80.8

31.2

Minor 5ss

27.4

-2.6

3.5

36.8

47.7

Minor BPS

59.9

0.31

1.7

73.75

37.7

Associated Gene:

Gene:

UBAP1

Ensembl Gene ID:

ENSAPLG00000007234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047874

1601723 - 1631370

29648

ENSAPLT00000037668

1601723 - 1633766

32044

ENSAPLT00000037105

1601723 - 1633766

32044

ENSAPLT00000007506

1601723 - 1633766

32044

ENSAPLT00000048022

1601723 - 1633766

32044