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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1604794_1606093_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1604794 - 1606093

Intron Length:

1300

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTGAAT

U12 Branch Point Sequence:

AGCTCTGCAAAC

Flanking Amino Acid:

MKKKGQNIDQVLDYLFAHGQ

Intron Amino Acid Position:

442

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.8

77.7

30.1

Major BPS

59.4

0.24

1.5

69.7

44.2

Major PPT

83.6

0.76

0.8

78.1

30.7

Minor 5ss

27.6

-2.6

3.3

39.2

46.2

Minor BPS

42.4

-0.6

2.1

50.81

39.9

Associated Gene:

Gene:

UBAP1

Ensembl Gene ID:

ENSAPLG00000007234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047874

1601723 - 1631370

29648

ENSAPLT00000037668

1601723 - 1633766

32044

ENSAPLT00000037105

1601723 - 1633766

32044

ENSAPLT00000007506

1601723 - 1633766

32044

ENSAPLT00000048022

1601723 - 1633766

32044