About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16051752_16137436_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16051752 - 16137436
Intron Length:
85685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCATCTGTAATT
Flanking Amino Acid:
LIRYIHQWEEIFHMTYDLAS
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89.5
0.89
0.7
84.3
30.8
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
58.7
0.35
2
75.99
41.5

Associated Gene:

Gene:
HCN1
Ensembl Gene ID:
ENSAPLG00000011715
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012208
15961294 - 16161203
199910