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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1611166_1613552_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1611166 - 1613552
Intron Length:
2387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TACCTCTGGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCTAC
U12 Branch Point Sequence:
CTCTCTCTACCT
Flanking Amino Acid:
DSSQLVREAQYDFSLEKKTI
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
51.3
0.03
1.3
52.4
42.7
Major PPT
65.2
0.34
1.1
65.2
40.8
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
50.5
0.09
2
71.75
45.6

Associated Gene:

Gene:
UBAP1
Ensembl Gene ID:
ENSAPLG00000007234
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047874
1601723 - 1631370
29648
ENSAPLT00000037105
1601723 - 1633766
32044
ENSAPLT00000007506
1601723 - 1633766
32044
ENSAPLT00000048022
1601723 - 1633766
32044