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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1611166_1616694_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1611166 - 1616694
Intron Length:
5529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TACCTCTGGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCTAC
U12 Branch Point Sequence:
CTCTCTCTACCT
Flanking Amino Acid:
LLRSWDPTLMYDFSLEKKTI
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.2
36.5
Major BPS
51.3
0.03
1.3
52.4
42.7
Major PPT
65.2
0.34
1.1
65.2
40.8
Minor 5ss
32.2
-2
3.1
37.6
42.2
Minor BPS
50.5
0.09
2
71.75
45.6

Associated Gene:

Gene:
UBAP1
Ensembl Gene ID:
ENSAPLG00000007234
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037668
1601723 - 1633766
32044