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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1613678_1616694_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1613678 - 1616694

Intron Length:

3017

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTGATCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTCTTTTGATCT

Flanking Amino Acid:

ASKKLGSDSHGPFSYLDDVP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

74.2

36.5

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

75.6

0.58

0.8

35.3

Minor 5ss

32.2

-2

3.1

37.6

42.2

Minor BPS

55.9

0.26

1.7

75.8

41.4

Associated Gene:

Gene:

UBAP1

Ensembl Gene ID:

ENSAPLG00000007234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037105

1601723 - 1633766

32044

ENSAPLT00000007506

1601723 - 1633766

32044

ENSAPLT00000048022

1601723 - 1633766

32044

ENSAPLT00000047874

1601723 - 1631370

29648