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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16137861_16160820_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16137861 - 16160820
Intron Length:
22960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
TCCATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
ATTGCATCAACC
Flanking Amino Acid:
FWIIHPYSDFRFYWDLIMLI
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
85.6
0.8
0.8
83.7
31.2
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
55
0.14
1.9
70.6
40.3

Associated Gene:

Gene:
HCN1
Ensembl Gene ID:
ENSAPLG00000011715
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012208
15961294 - 16161203
199910