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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1616736_1627618_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1616736 - 1627618
Intron Length:
10883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
AAATGTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.4
0.55
1
70.2
44.7
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
62.3
0.38
1.4
69.78
36

Associated Gene:

Gene:
UBAP1
Ensembl Gene ID:
ENSAPLG00000007234
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037668
1601723 - 1633766
32044
ENSAPLT00000037105
1601723 - 1633766
32044
ENSAPLT00000048022
1601723 - 1633766
32044
ENSAPLT00000047874
1601723 - 1631370
29648