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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1616736_1633647_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1616736 - 1633647
Intron Length:
16912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
AAATGTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTATTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.4
20.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74.4
0.55
1
70.2
44.7
Minor 5ss
34.8
-1.7
2.8
44.9
43.2
Minor BPS
62.3
0.38
1.4
69.78
36

Associated Gene:

Gene:
UBAP1
Ensembl Gene ID:
ENSAPLG00000007234
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007506
1601723 - 1633766
32044