Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16258980_16259039_R

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

16258980 - 16259039

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTTTACTTG

5'SS Class:

weak_minor

3'SS Sequence:

GATTTATATTGAG|A

3'SS Class:

degenerate_minor

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

GCTGATTTATAT

Flanking Amino Acid:

DVVNDDHKWAQGIARRWPVS

Intron Amino Acid Position:

109

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

47.4

-0.1

1.4

47.7

43.2

Major BPS

79.2

0.73

75.3

39.4

Major PPT

52.2

0.05

1.8

63.4

46.3

Minor 5ss

52.3

0.08

2.5

64.2

Minor BPS

44.3

-0.3

1.9

58.46

44.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018357

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032476

16258705 - 16260761

2057