Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16259315_16260711_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

16259315 - 16260711

Intron Length:

1397

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGT|GTCAGCTTA

5'SS Class:

weak_major

3'SS Sequence:

AGCATGGTGCCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTCTTAC

U12 Branch Point Sequence:

GCAGTCTTACTA

Flanking Amino Acid:

CMSAGKAEWTVHIYTDSYAV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

54.9

0.12

1.4

58.9

42.8

Major BPS

63.8

0.34

1.2

57.4

41.4

Major PPT

0.05

1.2

42.3

46.8

Minor 5ss

44.8

-0.6

2.9

57.2

46.9

Minor BPS

47.6

-0.1

1.7

51.68

40.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018357

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032476

16258705 - 16260761

2057