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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1627757_1631256_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

1627757 - 1631256

Intron Length:

3500

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGC|GTAAGTGCT

5'SS Class:

major

3'SS Sequence:

TCTCTTTATGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTTAAATAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.1

0.47

1.3

69.7

41.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

80.3

0.68

0.8

77.3

30.3

Minor 5ss

36.3

-1.6

3.2

46.2

42.2

Minor BPS

0.39

2.1

87.86

36.4

Associated Gene:

Gene:

UBAP1

Ensembl Gene ID:

ENSAPLG00000007234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047874

1601723 - 1631370

29648

ENSAPLT00000037668

1601723 - 1633766

32044