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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16304524_16305775_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
16304524 - 16305775
Intron Length:
1252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTAATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TATTCTTTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83
0.74
0.9
82.1
33.2
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
85.6
1.19
0.9
93.01
28.5

Associated Gene:

Gene:
EMB
Ensembl Gene ID:
ENSAPLG00000015050
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015704
16303478 - 16326138
22661