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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_163071_164192_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
163071 - 164192
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGACAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTATTCTAAAGC
Flanking Amino Acid:
GTGEHKVTVKVVAANDLKWQ
Intron Amino Acid Position:
1470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
67.8
39.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
87.2
0.84
0.7
79.8
32.2
Minor 5ss
29.9
-2.3
3.3
38.1
46.8
Minor BPS
56.6
0.19
2
70.36
41.3

Associated Gene:

Gene:
UNC13B
Ensembl Gene ID:
ENSAPLG00000003655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003753
161360 - 353765
192406
ENSAPLT00000003128
161360 - 370186
208827
ENSAPLT00000003123
161360 - 370186
208827