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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16308801_16309751_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16308801 - 16309751
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTGTATTAATA
Flanking Amino Acid:
TWYMTNGSEQIAINDSLVLD
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.8
85
25.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
90.8
0.92
0.7
89
26.5
Minor 5ss
42.5
-0.8
3.1
59
45.7
Minor BPS
59.2
0.29
1.7
70.26
36.2

Associated Gene:

Gene:
EMB
Ensembl Gene ID:
ENSAPLG00000015050
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015704
16303478 - 16326138
22661