Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16309880_16313156_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16309880 - 16313156

Intron Length:

3277

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

AAG|GCAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TACCTATTCTTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTCAT

U12 Branch Point Sequence:

ACTTCATGAACT

Flanking Amino Acid:

KEFSVVFHLQVPKIDVKDKP

Intron Amino Acid Position:

207

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.9

1.13

0.7

30.2

Major BPS

78.6

0.71

79.6

32.9

Major PPT

71.7

0.49

0.8

69.8

35.2

Minor 5ss

31.5

-2.1

48.7

47.5

Minor BPS

64.2

0.52

1.7

80.91

40.2

Associated Gene:

Gene:

EMB

Ensembl Gene ID:

ENSAPLG00000015050

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015704

16303478 - 16326138

22661