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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16313246_16314486_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16313246 - 16314486
Intron Length:
1241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
INKTENSWSIQLTISDNSKL
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
EMB
Ensembl Gene ID:
ENSAPLG00000015050
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015704
16303478 - 16326138
22661