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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1631371_1633647_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

1631371 - 1633647

Intron Length:

2277

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGTATC

5'SS Class:

strong_major

3'SS Sequence:

TGTGCTTGTACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

CCTTTCCTAATG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

94.2

1.04

0.7

90.4

20.6

Major BPS

81.9

0.79

0.9

80.1

Major PPT

74.4

0.55

68.3

42.2

Minor 5ss

34.8

-1.7

2.8

44.9

43.2

Minor BPS

54.4

-0

1.8

58.92

43.6

Associated Gene:

Gene:

UBAP1

Ensembl Gene ID:

ENSAPLG00000007234

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037668

1601723 - 1633766

32044