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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16320040_16321061_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16320040 - 16321061
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TTAAACCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTTAAAC
Flanking Amino Acid:
QMPTGLKSSPEPMTTTQTVN
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
85.5
30.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.1
0.56
0.9
70.6
40.5
Minor 5ss
41.9
-0.9
2.9
57.4
41.1
Minor BPS
69.6
0.59
1.3
74.76
36

Associated Gene:

Gene:
EMB
Ensembl Gene ID:
ENSAPLG00000015050
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015704
16303478 - 16326138
22661