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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16321146_16326050_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16321146 - 16326050
Intron Length:
4905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GCTTCTTTAAAG
Flanking Amino Acid:
CFSLPGGSPADLAVTPQDAN
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
66.2
0.37
1.5
65.2
42.6

Associated Gene:

Gene:
EMB
Ensembl Gene ID:
ENSAPLG00000015050
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015704
16303478 - 16326138
22661