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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16356538_16357749_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16356538 - 16357749
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
GGATGTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATCTATTTCATG
Flanking Amino Acid:
MGAVERQERIQKDID
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
60.9
0.25
1.1
50.6
47.8
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
47
-0.3
1.9
53.91
41.9

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029383
16355864 - 16466398
110535
ENSAPLT00000026386
16355864 - 16466398
110535
ENSAPLT00000024814
16355864 - 16466692
110829
ENSAPLT00000045138
16355864 - 16466398
110535
ENSAPLT00000030235
16355864 - 16466398
110535