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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16356538_16408353_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16356538 - 16408353
Intron Length:
51816

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
MGAVESVSYSVHVSE
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
92.1
0.95
0.6
88.1
21.8
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028247
16355864 - 16466398
110535