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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16358552_16408353_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16358552 - 16408353
Intron Length:
49802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCCTT
5'SS Class:
major
3'SS Sequence:
TTCTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTTCTTTTCTT
Flanking Amino Acid:
FTFTYTGGSKSVSYSVHVSE
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
65.7
45.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
92.1
0.95
0.6
88.1
21.8
Minor 5ss
42.8
-0.8
3.4
65.6
45.5
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018970
16357750 - 16466692
108943
ENSAPLT00000045138
16355864 - 16466398
110535
ENSAPLT00000015063
16322113 - 16466398
144286
ENSAPLT00000030235
16355864 - 16466398
110535
ENSAPLT00000025936
16357733 - 16466398
108666
ENSAPLT00000024814
16355864 - 16466692
110829