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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_1639141_1647929_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1639141 - 1647929
Intron Length:
8789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TGACTTGCATCT
Flanking Amino Acid:
QVVCGTKCNTLFVVDVQTGQ
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
95.5
1.02
0.5
88.9
28.1
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
38.4
-0.8
2.1
54.7
41.1

Associated Gene:

Gene:
DCAF12
Ensembl Gene ID:
ENSAPLG00000007012
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039021
1637537 - 1662583
25047
ENSAPLT00000007284
1637537 - 1668994
31458
ENSAPLT00000044401
1637537 - 1668957
31421