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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16413682_16415027_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16413682 - 16415027
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTATTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCCCTTTTATT
Flanking Amino Acid:
IPVIFHQIATELRKTSDVNY
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
76.9
34.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.1
0.66
1
83.5
30.7
Minor 5ss
47.5
-0.2
2.8
64.9
46.3
Minor BPS
61
0.43
1.6
77.02
39.8

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018970
16357750 - 16466692
108943
ENSAPLT00000028247
16355864 - 16466398
110535
ENSAPLT00000015063
16322113 - 16466398
144286
ENSAPLT00000026386
16355864 - 16466398
110535
ENSAPLT00000045138
16355864 - 16466398
110535
ENSAPLT00000025936
16357733 - 16466398
108666
ENSAPLT00000030235
16355864 - 16466398
110535
ENSAPLT00000024814
16355864 - 16466692
110829
ENSAPLT00000029383
16355864 - 16466398
110535