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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16415099_16417424_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16415099 - 16417424
Intron Length:
2326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTAATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCATTTTTAATT
Flanking Amino Acid:
KSKLQRENGEESQHNSTLEE
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.5
0.44
1.1
74
39.2
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
72.8
0.79
1.1
79.64
37.1

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025936
16357733 - 16466398
108666
ENSAPLT00000045138
16355864 - 16466398
110535
ENSAPLT00000024814
16355864 - 16466692
110829
ENSAPLT00000030235
16355864 - 16466398
110535
ENSAPLT00000018970
16357750 - 16466692
108943
ENSAPLT00000029383
16355864 - 16466398
110535
ENSAPLT00000015063
16322113 - 16466398
144286
ENSAPLT00000028247
16355864 - 16466398
110535