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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16417503_16422106_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16417503 - 16422106
Intron Length:
4604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAAG
5'SS Class:
major
3'SS Sequence:
ATTGTTTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ACTCCTACAATT
Flanking Amino Acid:
DSEEFYYGGQVSYDGELHKH
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
71.5
39.9
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
72.4
0.51
1
70
40.8
Minor 5ss
31.7
-2.1
3.1
39.3
46.2
Minor BPS
47.5
-0.1
1.8
65
39.7

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024814
16355864 - 16466692
110829
ENSAPLT00000030235
16355864 - 16466398
110535
ENSAPLT00000018970
16357750 - 16466692
108943
ENSAPLT00000029383
16355864 - 16466398
110535
ENSAPLT00000015063
16322113 - 16466398
144286
ENSAPLT00000028247
16355864 - 16466398
110535
ENSAPLT00000025936
16357733 - 16466398
108666
ENSAPLT00000045138
16355864 - 16466398
110535