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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_164286_169644_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
164286 - 169644
Intron Length:
5359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGACTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TTTTCTTCAACA
Flanking Amino Acid:
KTFVQTQTAQGSGVDDPVGE
Intron Amino Acid Position:
1439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.5
40.2
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
84.5
0.78
0.8
81.6
28.9
Minor 5ss
32
-2.1
3.3
40.2
45.4
Minor BPS
78.6
0.89
1.4
87.68
29.9

Associated Gene:

Gene:
UNC13B
Ensembl Gene ID:
ENSAPLG00000003655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003753
161360 - 353765
192406
ENSAPLT00000003128
161360 - 370186
208827
ENSAPLT00000003123
161360 - 370186
208827