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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_16449697_16453438_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16449697 - 16453438
Intron Length:
3742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAATTA
5'SS Class:
major
3'SS Sequence:
TCTTCGTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATATTTAATA
Flanking Amino Acid:
AADEIATGAQVVDLLVSMCR
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.56
1
71.1
35.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.7
0.62
0.8
69.7
36.7
Minor 5ss
39.5
-1.2
3.5
55.5
48.7
Minor BPS
65.8
0.49
1.4
71.62
34.1

Associated Gene:

Gene:
PARP8
Ensembl Gene ID:
ENSAPLG00000014372
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018970
16357750 - 16466692
108943
ENSAPLT00000029383
16355864 - 16466398
110535
ENSAPLT00000015063
16322113 - 16466398
144286
ENSAPLT00000028247
16355864 - 16466398
110535
ENSAPLT00000026386
16355864 - 16466398
110535
ENSAPLT00000045138
16355864 - 16466398
110535
ENSAPLT00000024814
16355864 - 16466692
110829
ENSAPLT00000030235
16355864 - 16466398
110535